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Endocytosis

Molecular Biology · NLM MeSH · updated 2026-10-29 · version 1

Citations verified against PubMedNot yet clinician-reviewed10 referencesApproximately 5 min read

Cellular uptake of extracellular materials within membrane-limited vacuoles or microvesicles.

Table of Contents

1. Definition2. Research landscape3. Reading the evidence4. Open-access studies5. Key reviews6. References7. About this article

Definition and research guide

This page combines a MeSH definition, publication statistics and selected research abstracts. It is a starting point for reading the literature, not a medical textbook or a systematic evidence review.

Content available: 4 complete abstracts (954 words), 10 references. Full article text is not stored or reproduced here; follow the PMID, DOI or PMC links to read the original sources and their access terms.

Definition

Cellular uptake of extracellular materials within membrane-limited vacuoles or microvesicles. endosomes play a central role in endocytosis.

Definition: NLM Medical Subject Headings (MeSH) scope note (Public domain (U.S. National Library of Medicine); attribution requested). View the MeSH record.

Also known as: Endocytoses.

Where it fits in the MeSH classification

Broader topics
Cell Physiological Phenomena
Narrower topics
Phagocytosis; Pinocytosis; Transcytosis
See also
Endosomes

Related concepts

  • Endosomes

Research landscape

PubMed indexes 91,482 records tagged with the MeSH heading “Endocytosis” (counts retrieved 2026-10-29). 11,244 of them (12.3%) were published from 2020 onward, and the busiest period so far is through 1999 with 39,703 records.

Reviews account for 9,862 records (10.8%) and meta-analyses for 11. Randomized controlled trials number 278 (0.3%) as a share of all records on the topic. Randomized trials make up only a small share of this literature, so much of what is known comes from laboratory, observational or descriptive work.

PubMed records by publication periodthrough 1999: 39,703 records; 2000-2009: 17,913 records; 2010-2019: 22,622 records; 2020 onward: 11,244 records39,703through 199917,9132000-200922,6222010-201911,2442020 onward
Records in PubMed indexed with this heading, by publication period. Real counts from NCBI E-utilities; the final period covers only part of the current year. Volume reflects how much has been published, not how strong the evidence is.
Show the data
PeriodRecords
through 199939,703
2000-200917,913
2010-201922,622
2020 onward11,244
Share of records by publication typeReviews: 10.8 percent; Meta-analyses: 0.0 percent; Randomized controlled trials: 0.3 percentReviews10.8% (9,862)Meta-analyses0.0% (11)Randomized controlled trials0.3% (278)
Share of all PubMed records on this heading that carry each publication type. Types overlap with other records, so the shares do not sum to 100%.
Publication-type chart data
Publication types among 91,482 PubMed records
TypeRecordsShare
Reviews9,86210.8%
Meta-analyses110.0%
Randomized controlled trials2780.3%

Method: PubMed query "Endocytosis"[MeSH Terms] with publication-type and date filters, retrieved 2026-10-29.

Reading the evidence in molecular biology

Molecular biology establishes mechanisms through controlled experiments, often in simplified systems such as purified proteins, cultured cells or model organisms. Such work can show what is possible in a defined system, but whether a pathway matters in a whole organism or in human disease needs further evidence. Check the experimental system, whether findings were reproduced by independent groups, and whether the authors tested the mechanism directly or inferred it from correlation.

Evidence from open-access studies

These open-access studies come from PubMed’s best-match results for this heading (papers whose main topic it is), ranked here by citation count, with one recent addition. Each abstract is reproduced in full under its recorded open licence so that you can read the authors’ own words. They illustrate the literature; they are not a systematic summary of it. Citation counts measure attention, not reliability or clinical benefit.

Study comparison — selected abstracts, not a systematic review
Study / authorsYearSource label / designEurope PMC citationsLicence / source
Macrophage DNases Limit Neutrophil Extracellular Trap-Mediated Defective Efferocytosis in Atherosclerosis
Dhawan UK, Vartak T, Englert H, Russo S, Vasconcellos LRC, Singhal A, et al.
2025Research article
Design not recorded in structured metadata
23cc by
PMID 41031413 · DOI · PMC12542999
Microglia-Mediated Phagocytosis in Alzheimer's Disease: Mechanisms, Heterogeneity, and Therapeutic Insights
Hassan H, Rawlinson C, Lan YL, Jenkins S, Chen R
2025Review article
Design not recorded in structured metadata
19cc by
PMID 41301546 · DOI · PMC12650038
GLP-1R activation restores Gas6-driven efferocytosis in senescent foamy macrophages to promote neural repair
Xia M, Li C, Zhang Y, Wang T, Zhang C, Zhou J, et al.
2025Research article
Design not recorded in structured metadata
15cc by
PMID 40915106 · DOI · PMC12446625
Piezo1 Upregulation in Monocyte-Derived Macrophages Impairs Post-Myocardial Infarction Cardiac Repair via Defective Efferocytosis and Enhanced Ferroptosis
Peng L, Xia Y, Zhao H, Guo Y, Xu X, Han X, et al.
2026Research article
Design not recorded in structured metadata
13cc by
PMID 41214880 · DOI · PMC12850066

Macrophage DNases Limit Neutrophil Extracellular Trap-Mediated Defective Efferocytosis in Atherosclerosis [1]

Research article Dhawan UK, Vartak T, Englert H, Russo S, Vasconcellos LRC, Singhal A, et al. · · 2025 · cited 23 times (Europe PMC)

Abstract reading summary — source excerpts
Opening excerpt
BackgroundNeutrophil extracellular traps (NETs) contribute to atherosclerosis progression and are linked to adverse clinical outcomes such as myocardial infarction and stroke.
Closing excerpt
Targeting the PERK-ATF4 axis to restore DNase release and NET clearance represents a promising therapeutic strategy to promote plaque stabilization.
Interpretation limits
Verbatim excerpts from the authors’ abstract; the closing excerpt may describe a finding, limitation or recommendation. Design, population, effect size and uncertainty have not been independently extracted or appraised. Read the complete abstract and linked paper before interpreting the findings.
Read complete abstract (311 words)

BackgroundNeutrophil extracellular traps (NETs) contribute to atherosclerosis progression and are linked to adverse clinical outcomes such as myocardial infarction and stroke. Although the triggers of NET formation in plaques are known, the mechanisms governing DNase-mediated NET clearance and how these are disrupted during atherosclerosis remain unclear. Moreover, the consequences of impaired NET clearance on disease progression are not known.MethodsLow-density lipoprotein receptor knockout (Ldlr-/-) mice with hematopoietic cell-specific deletion of DNase1 and DNase1L3 were fed a Western-type diet for 16 weeks to examine the impact of loss of DNase activity and the subsequent NET accumulation on advanced atherosclerosis. The effect of NETs on macrophage efferocytosis was examined in vitro and in the mouse peritoneal cavity and atherosclerotic plaque in vivo. To identify the signaling pathway impairing the NET-induced DNase response, in vitro assays were performed using selective endoplasmic reticulum stress pathway inhibitors, and the findings were validated in murine and human atherosclerotic tissues.ResultsLack of DNase secretion by macrophages led to accumulation of NETs in local tissues, including atherosclerotic plaques. Persisting NETs in turn promoted cleavage of the efferocytosis receptor MerTK (c-mer proto-oncogene tyrosine kinase), resulting in defective macrophage efferocytosis and increased atherosclerotic plaque necrosis. In vitro screening identified endoplasmic reticulum stress-induced activation of the PERK (protein kinase R-like endoplasmic reticulum kinase)-ATF (activating transcription factor) 4 signaling axis in atherogenic macrophages as a key driver of impaired DNase secretion, leading to delayed NET clearance and their pathological persistence. Treatment of human atherosclerotic plaques and Ldlr-/- mice with integrated stress response inhibitor, a selective PERK inhibitor, restored vascular DNase secretion and facilitated NET clearance.ConclusionsMacrophages play a key role in clearing NETs from tissues. Endoplasmic reticulum stress suppresses macrophage DNase secretion, leading to NET accumulation in atherosclerotic plaques, which triggers efferocytosis impairment and plaque progression. Targeting the PERK-ATF4 axis to restore DNase release and NET clearance represents a promising therapeutic strategy to promote plaque stabilization.

Abstract reproduced from the open-access article under the recorded cc by licence; © the authors. PMID 41031413 · DOI · PMC12542999

Microglia-Mediated Phagocytosis in Alzheimer's Disease: Mechanisms, Heterogeneity, and Therapeutic Insights [2]

Review article Hassan H, Rawlinson C, Lan YL, Jenkins S, Chen R · · 2025 · cited 19 times (Europe PMC)

Abstract reading summary — source excerpts
Opening excerpt
Microglia are the resident immune cells of the CNS, maintaining brain homeostasis partially through phagocytosis.
Closing excerpt
Modulating microglial activity to enhance their protective roles without triggering harmful inflammation represents a promising direction for therapeutic intervention in AD.
Interpretation limits
Verbatim excerpts from the authors’ abstract; the closing excerpt may describe a finding, limitation or recommendation. Design, population, effect size and uncertainty have not been independently extracted or appraised. Read the complete abstract and linked paper before interpreting the findings.
Read complete abstract (149 words)

Microglia are the resident immune cells of the CNS, maintaining brain homeostasis partially through phagocytosis. In Alzheimer's disease (AD), microglial phagocytosis is significantly impaired, contributing to the accumulation of pathological aggregates. Microglial phenotypes are dynamic and can shift depending on the disease stage and local environment. While some subpopulations retain or enhance phagocytic activity, especially under inflammatory conditions, others lose their capacity to clear toxic debris effectively. This variability underscores the need for a more nuanced understanding of microglial regulation and function. This paper explores the dual role of microglial phagocytosis in AD and discusses the emerging insights into microglial heterogeneity and how phenotypic shifts affect phagocytic capacity throughout disease progression. A comprehensive understanding of microglial phagocytosis and its dysregulation in AD is essential for designing targeted treatments. Modulating microglial activity to enhance their protective roles without triggering harmful inflammation represents a promising direction for therapeutic intervention in AD.

Abstract reproduced from the open-access article under the recorded cc by licence; © the authors. PMID 41301546 · DOI · PMC12650038

GLP-1R activation restores Gas6-driven efferocytosis in senescent foamy macrophages to promote neural repair [3]

Research article Xia M, Li C, Zhang Y, Wang T, Zhang C, Zhou J, et al. · · 2025 · cited 15 times (Europe PMC)

Abstract reading summary — source excerpts
Opening excerpt
Spinal cord injury (SCI) is a devastating condition characterized by the accumulation of myelin debris (MD), persistent neuroinflammation, and impaired neural regeneration.
Closing excerpt
Collectively, these findings identify macrophage senescence induced by excessive MD phagocytosis as a novel pathological contributor to SCI progression and establish Ex-4 as a promising therapeutic agent that restores macrophage homeostasis and promotes neural repair via GLP-1R/AMPK/Gas6/Axl signaling.
Interpretation limits
Verbatim excerpts from the authors’ abstract; the closing excerpt may describe a finding, limitation or recommendation. Design, population, effect size and uncertainty have not been independently extracted or appraised. Read the complete abstract and linked paper before interpreting the findings.
Read complete abstract (296 words)

Spinal cord injury (SCI) is a devastating condition characterized by the accumulation of myelin debris (MD), persistent neuroinflammation, and impaired neural regeneration. Although macrophages are pivotal for MD clearance, the impact of excessive MD phagocytosis on macrophage phenotype and function remains poorly understood. Building upon our prior evidence that exendin-4 (Ex-4), a glucagon-like peptide-1 receptor (GLP-1R) agonist, mitigates microglia-driven neuroinflammation post-SCI, this study elucidates the therapeutic efficacy and underlying mechanisms of Ex-4 in alleviating macrophage senescence, restoring efferocytotic capacity, and facilitating neural repair. Employing a T10 contusive SCI model in male C57BL/6 mice, in vivo administration of Ex-4 was combined with macrophage-specific knockdown of growth arrest-specific 6 (Gas6) via AAV-shRNA. Complementary in vitro assays involved bone marrow-derived macrophages (BMDMs) challenged with MD in the presence or absence of Ex-4 or AMP-activated protein kinase (AMPK) inhibition. Cellular senescence and efferocytosis were comprehensively assessed through live-cell imaging, immunofluorescence, senescence-associated β-galactosidase staining, quantitative PCR, and western blotting. Molecular docking and dynamics simulations elucidated GLP-1R-AMPK interactions, corroborated by in vivo validation. Results demonstrate that MD-engulfing macrophages exhibit foam cell-like morphology and upregulated senescence markers, including increased β-galactosidase activity and senescence-associated secretory phenotype, concomitant with diminished efferocytosis via downregulation of the Axl receptor. Senescent macrophages were shown to exacerbate neuronal apoptosis and astrocytic scar formation in co-culture systems. Ex-4 treatment significantly attenuated macrophage senescence, restored efferocytotic function, and reduced neuronal injury and astrocyte activation, effects contingent upon AMPK/Gas6/Axl pathway activation and abrogated by Gas6 knockdown. In vivo, Ex-4 administration enhanced remyelination, axonal regeneration, and functional recovery, while attenuating glial scar formation following SCI. Collectively, these findings identify macrophage senescence induced by excessive MD phagocytosis as a novel pathological contributor to SCI progression and establish Ex-4 as a promising therapeutic agent that restores macrophage homeostasis and promotes neural repair via GLP-1R/AMPK/Gas6/Axl signaling.

Abstract reproduced from the open-access article under the recorded cc by licence; © the authors. PMID 40915106 · DOI · PMC12446625

Piezo1 Upregulation in Monocyte-Derived Macrophages Impairs Post-Myocardial Infarction Cardiac Repair via Defective Efferocytosis and Enhanced Ferroptosis [4]

Research article Peng L, Xia Y, Zhao H, Guo Y, Xu X, Han X, et al. · · 2026 · cited 13 times (Europe PMC)

Abstract reading summary — source excerpts
Opening excerpt
The regulation of macrophage function, particularly that of monocyte-derived macrophages (MoMs), by mechanical forces during myocardial infarction (MI) remains poorly understood.
Closing excerpt
These data establish an ischemic heart-bone marrow functional network and provide a novel therapeutic strategy in which MoM Piezo1 is targeted for post-MI heart repair.
Interpretation limits
Verbatim excerpts from the authors’ abstract; the closing excerpt may describe a finding, limitation or recommendation. Design, population, effect size and uncertainty have not been independently extracted or appraised. Read the complete abstract and linked paper before interpreting the findings.
Read complete abstract (198 words)

The regulation of macrophage function, particularly that of monocyte-derived macrophages (MoMs), by mechanical forces during myocardial infarction (MI) remains poorly understood. Consistently upregulated Piezo1 expression in cardiac macrophages and MoMs post-MI is found. Elevated Piezo1 expression in MoMs directly contributes to increased Piezo1 levels in cardiac macrophages. Myeloid cell-specific Piezo1-deficient mice (Piezo1Lyz2) exhibit significant improvements in ventricular function/remodeling after MI, accompanied by decreased apoptotic cardiomyocytes and decreased inflammation, increased numbers of macrophages, and increased border zone efferocytosis. In vitro, Piezo1 activation by Yoda1 increased oxygen-glucose deprivation (OGD)-induced ferroptosis and impaired MoM efferocytosis. Conversely, Piezo1 deficiency in MoMs decreases ferroptosis and increases efferocytosis. SLC7A11 is shown to mediate Piezo1-induced defective efferocytosis in MoMs. Piezo1 activation aggravated OGD-induced macrophage ferroptosis via Ca2+ influx followed by SLC15A3 upregulation. Piezo1 upregulated SLC7A11 in macrophages via a Ca2+/ATF4-dependent pathway. MoM-specific SLC7A11 knockdown significantly increases efferocytosis, reduces cardiomyocyte apoptosis and inflammation, and ameliorates post-MI left ventricular remodeling and function. In conclusion, early Piezo1 activation in MoMs is identified during MI, which governs the fate and function of recruited macrophages. These data establish an ischemic heart-bone marrow functional network and provide a novel therapeutic strategy in which MoM Piezo1 is targeted for post-MI heart repair.

Abstract reproduced from the open-access article under the recorded cc by licence; © the authors. PMID 41214880 · DOI · PMC12850066

Key reviews and meta-analyses

The most cited review-type papers among PubMed’s best-match results for this heading, listed with bibliographic details only. Follow the links for the full text and access terms.

  • Research article Key principles and methods for studying the endocytosis of biological and nanoparticle therapeutics [5]
    Rennick JJ, Johnston APR, Parton RG · Nat Nanotechnol · 2021 · cited 1,083 times (Europe PMC)
  • Research article Efferocytosis in health and disease [6]
    Doran AC, Yurdagul A, Tabas I · Nat Rev Immunol · 2020 · cited 904 times (Europe PMC)
  • Research article Tissue-specific macrophages: how they develop and choreograph tissue biology [7]
    Mass E, Nimmerjahn F, Kierdorf K, Schlitzer A · Nat Rev Immunol · 2023 · cited 511 times (Europe PMC)
  • Research article Phagocytosis: Our Current Understanding of a Universal Biological Process [8]
    Uribe-Querol E, Rosales C · Front Immunol · 2020 · cited 510 times (Europe PMC)
  • Research article Integrin trafficking in cells and tissues [9]
    Moreno-Layseca P, Icha J, Hamidi H, Ivaska J · Nat Cell Biol · 2019 · cited 379 times (Europe PMC)
  • Research article Brief update on endocytosis of nanomedicines [10]
    Patel S, Kim J, Herrera M, Mukherjee A, Kabanov AV, Sahay G · Adv Drug Deliv Rev · 2019 · cited 292 times (Europe PMC)

References

  1. Dhawan UK, Vartak T, Englert H, Russo S, Vasconcellos LRC, Singhal A, et al.. Macrophage DNases Limit Neutrophil Extracellular Trap-Mediated Defective Efferocytosis in Atherosclerosis. . 2025. PMID 41031413 · DOI · PMC12542999
  2. Hassan H, Rawlinson C, Lan YL, Jenkins S, Chen R. Microglia-Mediated Phagocytosis in Alzheimer's Disease: Mechanisms, Heterogeneity, and Therapeutic Insights. . 2025. PMID 41301546 · DOI · PMC12650038
  3. Xia M, Li C, Zhang Y, Wang T, Zhang C, Zhou J, et al.. GLP-1R activation restores Gas6-driven efferocytosis in senescent foamy macrophages to promote neural repair. . 2025. PMID 40915106 · DOI · PMC12446625
  4. Peng L, Xia Y, Zhao H, Guo Y, Xu X, Han X, et al.. Piezo1 Upregulation in Monocyte-Derived Macrophages Impairs Post-Myocardial Infarction Cardiac Repair via Defective Efferocytosis and Enhanced Ferroptosis. . 2026. PMID 41214880 · DOI · PMC12850066
  5. Rennick JJ, Johnston APR, Parton RG. Key principles and methods for studying the endocytosis of biological and nanoparticle therapeutics. Nat Nanotechnol. 2021. PMID 33712737 · DOI
  6. Doran AC, Yurdagul A, Tabas I. Efferocytosis in health and disease. Nat Rev Immunol. 2020. PMID 31822793 · DOI · PMC7667664
  7. Mass E, Nimmerjahn F, Kierdorf K, Schlitzer A. Tissue-specific macrophages: how they develop and choreograph tissue biology. Nat Rev Immunol. 2023. PMID 36922638 · DOI · PMC10017071
  8. Uribe-Querol E, Rosales C. Phagocytosis: Our Current Understanding of a Universal Biological Process. Front Immunol. 2020. PMID 32582172 · DOI · PMC7280488
  9. Moreno-Layseca P, Icha J, Hamidi H, Ivaska J. Integrin trafficking in cells and tissues. Nat Cell Biol. 2019. PMID 30602723 · DOI · PMC6597357
  10. Patel S, Kim J, Herrera M, Mukherjee A, Kabanov AV, Sahay G. Brief update on endocytosis of nanomedicines. Adv Drug Deliv Rev. 2019. PMID 31419450 · DOI · PMC6986687

About this article

Sources
NLM Medical Subject Headings (definition, synonyms); NCBI PubMed (counts, identifiers); Europe PMC (open-access abstracts and citation counts).
Verification
Every reference was resolved against PubMed on 2026-10-31; title, year and DOI matched.
Review state
automated source verified; no human expert review has been recorded yet.
Version
1, last updated 2026-10-29.

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At a glance

91,482
PubMed records on this heading
12%
published since 2020
9,862
review articles
278
randomized trials
10
verified references below

Counts come from PubMed on 2026-10-29; they show how much has been written, not how strong the evidence is.

Related topics See all →

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  • Alternative SplicingMolecular Biology
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