Cholangiocarcinoma (TCGA, PanCancer Atlas)

Summary

Cholangiocarcinoma (TCGA, PanCancer Atlas) is a study catalogued by cBioPortal DataHub under the cancer-type code chol. EvidenceHelix groups it with liver, bile duct and gallbladder studies and lists it in the TCGA PanCancer Atlas collection.

Study description

Cholangiocarcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/pancani3/index.html).

Text as published in the source's study metadata.

Citation & PubMed

TCGA, Cell 2018

Linked PubMed records: PMID 29625048, PMID 29596782, PMID 29622463, PMID 29617662, PMID 29625055, PMID 29625050, PMID 29617662, PMID 32214244, PMID 29625049, PMID 29850653, PMID 36334560

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

chol_tcga_pan_can_atlas_2018

Short name

Cholangiocarcinoma (TCGA PanCan)

Source cancer-type code

chol

Reference genome

not given

Source access groups

PUBLIC;PANCAN

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

TCGA, Cell 2018

• PubMed record 29625048 ↗
• PubMed record 29596782 ↗
• PubMed record 29622463 ↗
• PubMed record 29617662 ↗
• PubMed record 29625055 ↗
• PubMed record 29625050 ↗
• PubMed record 29617662 ↗
• PubMed record 32214244 ↗
• PubMed record 29625049 ↗
• PubMed record 29850653 ↗
• PubMed record 36334560 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Cholangiocarcinoma (ICGC, Cancer Discov 2017)

  Whole-exome sequencing and Targeted/Exome sequencing of 489 Cholangiocarcinoma samples from 10 countries.

  Liver, bile duct and gallbladderOther published and consortium studiesSource code cholPubMed 1

• Cholangiocarcinoma (MSK, Clin Cancer Res 2018)

  Targeted sequencing (MSK-IMPACT) of 195 tumor samples (194 with matched normals) from 192 cholangiocarcinoma patients.

  Liver, bile duct and gallbladderMSK studiesSource code cholPubMed 1

• Cholangiocarcinoma (National Cancer Centre of Singapore, Nat Genet 2013)

  Whole exome sequencing of 15 cholangiocarcinoma cases.

  Liver, bile duct and gallbladderOther published and consortium studiesSource code cholPubMed 1

• Cholangiocarcinoma (National University of Singapore, Nat Genet 2012)

  Exome Sequencing for Opisthorchis viverrini-related cholangiocarcinoma in 8 O.viverrini-related tumors and matched normal tissue.

  Liver, bile duct and gallbladderOther published and consortium studiesSource code cholPubMed 1

• Cholangiocarcinoma (TCGA, Firehose Legacy)

  TCGA Cholangiocarcinoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/CHOL/20160128/). Previously known as TCGA Provisional.

  Liver, bile duct and gallbladderTCGA Firehose LegacySource code chol

• Intrahepatic Cholangiocarcinoma (JHU, Nat Genet 2013)

  Exome sequencing of tumor/normal pairs from 32 intrahepatic cholangiocarcinoma cases and 8 gall bladder carcinoma cases.

  Liver, bile duct and gallbladderOther published and consortium studiesSource code cholPubMed 1

• Liver Hepatocellular Carcinoma (TCGA, PanCancer Atlas)

  Liver Hepatocellular Carcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancance…

  Liver, bile duct and gallbladderTCGA PanCancer AtlasSource code hccPubMed 12

• Ampullary Carcinoma (Baylor College of Medicine, Cell Reports 2016)

  Exome sequencing analysis of 160 cancers arising in the periampullary region, 62 of these clearly arising from either the bile duct (n = 44) or the duodenum (n = 18) and 98 for which the epithelium of origin could not…

  Liver, bile duct and gallbladderOther published and consortium studiesSource code ampcaPubMed 1

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