Cancer family · grouped by EvidenceHelix from study titles

Lung and pleura: 38 studies

Public cancer genomics studies in this group, with the collection each belongs to. Open a study for its description, citation and original source links.

• Atypical Small Cell Lung Cancer (MSK, Cancer Discov 2024)

  Targeted sequencing of 31 atypical small cell lung cancers lacking RB1 and TP53 co-inactivation and their matched normals via MSK-IMPACT, including structural variant analysis via whole-genome sequencing. This data is…

  Lung and pleuraMSK studiesSource code lungPubMed 1

• Lung Adenocarcinoma (Broad, Cell 2012)

  Whole-exome and/or whole-genome sequencing of 183 lung adenocarcinomas and matched normal tissue pairs.

  Lung and pleuraOther published and consortium studiesSource code luadPubMed 1

• Lung Adenocarcinoma (CAS, Cell 2020)

  Whole-exome sequencing of 103 lung adenocarcinoma cases and their matched normals in Chinese patients.

  Lung and pleuraOther published and consortium studiesSource code luadPubMed 1

• Lung Adenocarcinoma (CPTAC, Cell 2020)

  Whole genome (WGS) or whole exome sequencing (WES) of 110 tumors and 101 matched normal adjacent tissues in lung adenocarcinoma. Proteogenomic characterization generated by CPTAC.

  Lung and pleuraOther published and consortium studiesSource code luadPubMed 1

• Lung Adenocarcinoma (MSK Mind,Nature Cancer 2022)

  Multimodality tools to predict response to PD-(L)1 blockade in patients with lung adenocarcinoma.

  Lung and pleuraMSK studiesSource code lungPubMed 1

• Lung Adenocarcinoma (MSK, 2021)

  Targeted sequencing of 186 matched normal samples from 186 lung adenocarcinoma patient via MSK-IMPACT.

  Lung and pleuraMSK studiesSource code luad

• Lung Adenocarcinoma (MSK, J Thorac Oncol 2020)

  Targeted sequencing of 604 lung adenocarcinoma tumor/normal pairs via MSK-IMPACT.

  Lung and pleuraMSK studiesSource code luadPubMed 1

• Lung Adenocarcinoma (MSK, NPJ Precision Oncology 2021)

  Targeted sequencing of 426 matched normal samples from 426 lung adenocarcinoma patients.

  Lung and pleuraMSK studiesSource code luadPubMed 1

• Lung Adenocarcinoma (MSK, Science 2015)

  Whole-exome sequencing of 34 non small cell lung cancer tumor/normal pairs.

  Lung and pleuraMSK studiesSource code luadPubMed 1

• Lung Adenocarcinoma (OncoSG, Nat Genet 2020)

  Whole-exome and transcriptome sequencing of 305 east asian lung adenocarcinomas with matched normals. Courtesy of OncoSG (https://src.gisapps.org/OncoSG/). Lung Cancer Consortium Singapore (LCCS).

  Lung and pleuraOther published and consortium studiesSource code luadPubMed 1

• Lung Adenocarcinoma (TCGA, Firehose Legacy)

  TCGA Lung Adenocarcinoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/LUAD/20160128/). Previously known as TCGA Provisional.

  Lung and pleuraTCGA Firehose LegacySource code luad

• Lung Adenocarcinoma (TCGA, Nature 2014)

  Whole exome sequencing of 230 lung adenocarcinoma tumor/normal pairs. Raw data via the TCGA Data Portal (https://tcga-data.nci.nih.gov/docs/publications/luad_2014/).

  Lung and pleuraTCGA (other releases)Source code luadPubMed 1

• Lung Adenocarcinoma (TCGA, PanCancer Atlas)

  Lung Adenocarcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/panc…

  Lung and pleuraTCGA PanCancer AtlasSource code luadPubMed 12

• Lung Adenocarcinoma (TSP, Nature 2008)

  Targeted sequencing of 163 lung adenocarcinoma tumor/normal pairs. Generated by WashU/Broad.

  Lung and pleuraOther published and consortium studiesSource code luadPubMed 1

• Lung Adenocarcinoma Met Organotropism (MSK, Cancer Cell 2023)

  Targeted and whole-exome sequencing of 2653 lung adenocarcinoma tumor/normal sample pairs.

  Lung and pleuraMSK studiesSource code luadPubMed 1

• Lung Cancer (SMC, Cancer Research 2016)

  Whole exome and whole transcriptome sequencing of primary and multiple metastatic lymph node samples from 6 lung cancer patients with their matched normals.

  Lung and pleuraOther published and consortium studiesSource code lungPubMed 1

• Lung Cancer in Never Smokers (NCI, Nature Genetics 2021)

  Whole-genome sequencing of 232 treatment-naive never smoker patients with Lung cancer and their matched normals.

  Lung and pleuraOther published and consortium studiesSource code luadPubMed 1

• Lung Squamous Cell Carcinoma (CPTAC, Cell 2021)

  Whole genome / whole exome sequencing and proteogenomic portrait of 108 prospectively collected, treatment-naive, primary LSCC tumors and 99 paired normal adjacent tissues. Generated by CPTAC.

  Lung and pleuraOther published and consortium studiesSource code luscPubMed 1

• Lung Squamous Cell Carcinoma (TCGA, Firehose Legacy)

  TCGA Lung Squamous Cell Carcinoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/LUSC/20160128/). Previously known as TCGA Provisional.

  Lung and pleuraTCGA Firehose LegacySource code lusc

• Lung Squamous Cell Carcinoma (TCGA, Nature 2012)

  Whole exome sequencing of 178 lung squamous cell carcinoma tumor/normal pairs. The Cancer Genome Atlas (TCGA) (http://cancergenome.nih.gov/) Lung Squamous Cell Carcinoma project.

  Lung and pleuraTCGA (other releases)Source code luscPubMed 1

• Lung Squamous Cell Carcinoma (TCGA, PanCancer Atlas)

  Lung Squamous Cell Carcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancancera…

  Lung and pleuraTCGA PanCancer AtlasSource code luscPubMed 12

• Mesothelioma (TCGA, Firehose Legacy)

  TCGA Mesothelioma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/MESO/20160128/). Previously known as TCGA Provisional.

  Lung and pleuraTCGA Firehose LegacySource code plmeso

• Mesothelioma (TCGA, PanCancer Atlas)

  Mesothelioma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/pancani3/in…

  Lung and pleuraTCGA PanCancer AtlasSource code plmesoPubMed 11

• Metastatic Non-Small Cell Lung Cancer (MSK, Nature Medicine 2022)

  Targeted sequencing of ctDNA samples drawn from patients with metastatic NSCLC using the Resolution ctDx Lung platform. For more information contact jeej@mskcc.org or lib1@mskcc.org

  Lung and pleuraMSK studiesSource code nsclcPubMed 1

• Non-Small Cell Lung Cancer (MSK, Cancer Cell 2018)

  Whole-exome sequencing of 75 tumor/normal NSCLC pairs treated with PD-1 plus CTLA-4 blockade..

  Lung and pleuraMSK studiesSource code nsclcPubMed 1

• Non-Small Cell Lung Cancer (MSK, J Clin Oncol 2018)

  IMPACT sequencing of 240 NSCLC tumor/normal pairs treated at MSKCC with anti-PD-(L)1 based therapy.

  Lung and pleuraMSK studiesSource code nsclcPubMed 1

• Non-Small Cell Lung Cancer (MSK, Science 2015)

  Whole exome sequencing of tumor-normal tissue pairs from 16 non-small cell lung cancer samples.

  Lung and pleuraMSK studiesSource code nsclcPubMed 1

• Non-Small Cell Lung Cancer (TRACERx, NEJM & Nature 2017)

  Whole-exome sequencing of 327 primary tumors with matched germline samples, and phylogenetic ctDNA sequencing of 96 pre- and 24 postoperative samples from 100 NSCLC TRACERx patients.

  Lung and pleuraOther published and consortium studiesSource code nsclcPubMed 2

• Non-Small Cell Lung Cancer (University of Turin, Lung Cancer 2017)

  Targeted next-generation sequencing of 41 NSCLC samples.

  Lung and pleuraOther published and consortium studiesSource code nsclcPubMed 1

• Non-Small Cell Lung Cancer Brain Metastasis (MSK, Nat Commun 2023)

  Targeted sequencing of 322 NSCLC brain metastasis and their matched normals via MSK-IMPACT.

  Lung and pleuraMSK studiesSource code nsclcPubMed 1

• Pan-Lung Cancer (TCGA, Nat Genet 2016)

  Whole-exome sequencing of 660 lung ADC and 484 lung SqCC tumor/normal pairs.

  Lung and pleuraTCGA (other releases)Source code nsclcPubMed 1

• Pleural Mesothelioma (MSK, Clin Cancer Res 2024)

  Targeted sequencing of 14 genomic near-haploidization (GNH) pleural mesothelioma samples and their matched normals via MSK-IMPACT.

  Lung and pleuraMSK studiesSource code plmesoPubMed 1

• Pleural Mesothelioma (NYU, Cancer Res 2015)

  Whole-exome sequencing of 22 malignant pleural mesotheliomas (PLMESO) tumor/normal pairs.

  Lung and pleuraOther published and consortium studiesSource code plmesoPubMed 1

• Small Cell Lung Cancer (CLCGP, Nat Genet 2012)

  Comprehensive whole exam profiling of 29 small cell lung cancer samples. Generated by the Clinical Lung Cancer Genome Project. Data from Peifer et al., Nat Genet 2012 (German group). Paper states data available at htt…

  Lung and pleuraOther published and consortium studiesSource code sclcPubMed 1

• Small Cell Lung Cancer (Johns Hopkins, Nat Genet 2012)

  Whole exome-sequencing of 80 human SCLCs, including 36 primary SCLC human tumor and adjacent normal sample pairs and 17 paired SCLC cell lines and their patient-matched lymphoblastoid lines, as well as 4 primary SCLC…

  Lung and pleuraOther published and consortium studiesSource code sclcPubMed 1

• Small Cell Lung Cancer (U Cologne, Nature 2015)

  Whole-genome sequencing of 120 small cell lung cancer(SCLC) tumour samples and matched normal material. Data from George et al., Nature 2015 (German group). Paper states data available in GEO (GSE69091).

  Lung and pleuraOther published and consortium studiesSource code sclcPubMed 1

• Small Cell Lung Cancer (UC, Nature 2024)

  Whole genome and whole exome sequencing of 160 small cell lung cancer tumors and their matched normals from 65 patients.

  Lung and pleuraOther published and consortium studiesSource code lungPubMed 1

• Small-Cell Lung Cancer (Multi-Institute, Cancer Cell 2017)

  Whole Exome Sequencing of 10 paired chemosensitive and chemoresistant SCLC PDX. Data from Gardner et al., Cancer Cell 2017. Data available in dbGaP (PHS001249.v1.p1).

  Lung and pleuraOther published and consortium studiesSource code sclcPubMed 1