Cancer family · grouped by EvidenceHelix from study titles

Gynecologic: 28 studies

Public cancer genomics studies in this group, with the collection each belongs to. Open a study for its description, citation and original source links.

• Cancer Cell Line Encyclopedia (Novartis/Broad, Nature 2012)

  Targeted sequencing of 1020 samples from Cancer Cell Line Encyclopedia from the Broad Institute and Novartis.

  GynecologicOther published and consortium studiesSource code mixedPubMed 1

• Cervical Cancer (MSK, Clin Cancer Res 2023)

  Targeted sequencing of 177 cervical tumors and their matched normal samples via MSK-IMPACT.

  GynecologicMSK studiesSource code cervixPubMed 1

• Cervical Squamous Cell Carcinoma (TCGA, PanCancer Atlas)

  Cervical Squamous Cell Carcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancan…

  GynecologicTCGA PanCancer AtlasSource code cescPubMed 12

• Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (TCGA, Firehose Legacy)

  TCGA Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/CESC/20160128/). Previously known as TCGA Provisional.

  GynecologicTCGA Firehose LegacySource code cesc

• Endometrial and Ovarian Cancer (MSK, Nature Medicine 2024)

  Targeted sequencing of 33 endometrial and ovarian tumors and their matched normals via MSK-IMPACT.

  GynecologicMSK studiesSource code mixedPubMed 1

• Endometrial Cancer (MSK, 2018)

  MSK-IMPACT sequencing of 197 advanced-staged endometrial cancer tumor samples with matched normals, from 189 patients treated at MSK.

  GynecologicMSK studiesSource code ucecPubMed 1

• Endometrial Cancer (MSK, Cancer Discovery 2023)

  Targeted sequencing of 1882 endometrial cancers and their matched normals via MSK-IMPACT.

  GynecologicMSK studiesSource code ucecPubMed 1

• Endometrial Carcinoma (CPTAC, Cell 2020)

  Proteogenomic Characterization of Endometrial Carcinoma. Generated by CPTAC.

  GynecologicOther published and consortium studiesSource code ucecPubMed 1

• Endometrial Carcinoma (MSK, Molecular Oncology 2024)

  Targeted sequencing of 69 ERBB2-mutant endometrial carcinoma tumors and their matched normal pairs via MSK-IMPACT.

  GynecologicMSK studiesSource code ucecPubMed 1

• Endometrial Carcinoma cfDNA (MSK, Clin Cancer Res 2022)

  High-sensitivity mutation analysis of cell-free DNA for disease monitoring in endometrial cancer.

  GynecologicMSK studiesSource code ucecPubMed 1

• Endometrial Carcinoma MSI (MSK, Clin Cancer Res 2022)

  Clinical and genetic features of microsatellite instability-high endometrial cancers harboring germline or somatic mutations in MMR genes or MLH1 promoter hypermethylation.

  GynecologicMSK studiesSource code ucecPubMed 1

• High-Grade Serous Ovarian Cancer (MSK, NPJ Genome Med 2021)

  Targeted Sequencing of 45 Serous Ovarian Cancer tumor/normal pairs from 45 patients.

  GynecologicMSK studiesSource code hgsocPubMed 1

• Low-Grade Serous Ovarian Cancer (MSK, Clin Cancer Res 2022)

  Characterization of the somatic mutational landscape of MAPK pathway in 119 low-grade serous ovarian carcinomas and their matched normals.

  GynecologicMSK studiesSource code lgsocPubMed 1

• Ovarian Cancer (Gray Foundation, Cancer Discov 2024)

  Microregion transcriptomic data (GeoMx) and multiplex imaging (CyCIF) for High-Grade Serous ovarian Cancer Cases (HGSOC). This resource was supported by the Gray Foundation.

  GynecologicOther published and consortium studiesSource code ovaryPubMed 1

• Ovarian Cancer - MSK SPECTRUM (MSK, Nature 2022)

  Multi-region, multi-modal profiling of 42 untreated high-grade serous ovarian cancer (HGSOC) tumor/normal pairs. This study reports an integrative analysis of mutational processes and their impact on the tumor microen…

  GynecologicMSK studiesSource code hgsocPubMed 1

• Ovarian Serous Cystadenocarcinoma (TCGA, Firehose Legacy)

  TCGA Ovarian Serous Cystadenocarcinoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/OV/20160128/). Previously known as TCGA Provisional.

  GynecologicTCGA Firehose LegacySource code hgsoc

• Ovarian Serous Cystadenocarcinoma (TCGA, Nature 2011)

  Whole exome sequencing of 489 high-grade serous ovarian adenocarcinoma tumor/normal pairs. The Cancer Genome Atlas (TCGA) (http://cancergenome.nih.gov/) Serous Ovarian Cancer project. 489 cases. Raw data via the TCGA…

  GynecologicTCGA (other releases)Source code hgsocPubMed 1

• Ovarian Serous Cystadenocarcinoma (TCGA, PanCancer Atlas)

  Ovarian Serous Cystadenocarcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/panca…

  GynecologicTCGA PanCancer AtlasSource code hgsocPubMed 12

• Small Cell Carcinoma of the Ovary (MSK, Nat Genet 2014)

  Targeted sequencing of 12 SCCO paired tumor and normal samples.

  GynecologicMSK studiesSource code sccoPubMed 1

• Squamous Cell Carcinoma of the Vulva (CUK, Exp Mol Med 2018)

  Whole exome sequencing of tumor/normal pairs from 15 vulvar squamous cell carcinomas.

  GynecologicOther published and consortium studiesSource code vscPubMed 1

• Uterine Carcinosarcoma (Johns Hopkins, Nat Commun 2014)

  Whole exome sequencing (WXS) of 22 uterine carcinosarcoma/uterine malignant mixed Mullerian (UCS) tumors with matched normals.

  GynecologicOther published and consortium studiesSource code ucsPubMed 1

• Uterine Carcinosarcoma (TCGA, Firehose Legacy)

  TCGA Uterine Carcinosarcoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/UCS/20160128/). Previously known as TCGA Provisional.

  GynecologicTCGA Firehose LegacySource code ucs

• Uterine Carcinosarcoma (TCGA, PanCancer Atlas)

  Uterine Carcinosarcoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/p…

  GynecologicTCGA PanCancer AtlasSource code ucsPubMed 11

• Uterine Clear Cell Carcinoma (NIH, Cancer 2017)

  Whole exome sequencing of paired tumor-normal DNAs from 16 cases of clear cell endometrial tumors.

  GynecologicOther published and consortium studiesSource code ucccPubMed 1

• Uterine Corpus Endometrial Carcinoma (TCGA, Firehose Legacy)

  TCGA Uterine Corpus Endometrial Carcinoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/UCEC/20160128/). Previously known as TCGA Provisional.

  GynecologicTCGA Firehose LegacySource code ucec

• Uterine Corpus Endometrial Carcinoma (TCGA, Nature 2013)

  Whole exome sequencing of 373 endometrial carcinoma tumors with matched normals. TCGA Uterine Corpus Endometrial Carcinoma project; raw data at the NCI (https://tcga-data.nci.nih.gov/docs/publications/ucec_2013/).

  GynecologicTCGA (other releases)Source code ucecPubMed 1

• Uterine Corpus Endometrial Carcinoma (TCGA, PanCancer Atlas)

  Uterine Corpus Endometrial Carcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pa…

  GynecologicTCGA PanCancer AtlasSource code ucecPubMed 12

• Uterine Sarcoma/Mesenchymal (MSK, Clin Cancer Res 2020)

  Targeted Sequencing of 108 Uterine Sarcoma/Mesenchymal tumor/normal pairs from 107 patients.

  GynecologicMSK studiesSource code usarcPubMed 1