Head and Neck Squamous Cell Carcinoma (TCGA, Nature 2015)

Summary

Head and Neck Squamous Cell Carcinoma (TCGA, Nature 2015) is a study catalogued by cBioPortal DataHub under the cancer-type code hnsc. EvidenceHelix groups it with head and neck studies and lists it in the TCGA (other releases) collection.

Study description

Whole-exome sequencing and/or whole-genome sequencing of 279 head and neck squamous cell carcinoma tumor/normal pairs. The Cancer Genome Atlas (TCGA) head and neck squamous cell carcinoma Project.

Text as published in the source's study metadata.

Citation & PubMed

TCGA, Nature 2015

Linked PubMed records: PMID 25631445

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

hnsc_tcga_pub

Short name

Head & neck (TCGA pub)

Source cancer-type code

hnsc

Reference genome

not given

Source access groups

PUBLIC

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

TCGA, Nature 2015

• PubMed record 25631445 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Head and Neck Squamous Cell Carcinoma (Broad, Science 2011)

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  Head and neckOther published and consortium studiesSource code hnscPubMed 1

• Head and Neck Squamous Cell Carcinoma (Johns Hopkins, Science 2011)

  Whole exome sequencing of 32 head and neck squamous cell carcinoma tumor/normal sample pairs.

  Head and neckOther published and consortium studiesSource code hnscPubMed 1

• Head and Neck Squamous Cell Carcinoma (TCGA, Firehose Legacy)

  TCGA Head and Neck Squamous Cell Carcinoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/HNSC/20160128/). Previously known as TCGA Provisional.

  Head and neckTCGA Firehose LegacySource code hnsc

• Head and Neck Squamous Cell Carcinoma (TCGA, PanCancer Atlas)

  Head and Neck Squamous Cell Carcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/p…

  Head and neckTCGA PanCancer AtlasSource code hnscPubMed 12

• Adenoid Cystic Carcinoma (FMI, Am J Surg Pathl. 2014)

  Targeted Sequencing of 28 metastatic Adenoid Cystic Carcinoma samples.

  Head and neckOther published and consortium studiesSource code acycPubMed 1

• Adenoid Cystic Carcinoma (JHU, Cancer Prev Res 2016)

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• Adenoid Cystic Carcinoma (MDA, Clin Cancer Res 2015)

  WGS of 21 salivary ACCs and targeted molecular analyses of a validation set (81 patients).

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• Adenoid Cystic Carcinoma (MSK, Nat Genet 2013)

  Whole-exome or whole-genome sequencing analysis of 60 ACC tumor/normal pairs

  Head and neckMSK studiesSource code acycPubMed 1

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