Research reading room
Pediatric Neuroblastoma (TARGET, 2018)
Summary
Pediatric Neuroblastoma (TARGET, 2018) is a study catalogued by cBioPortal DataHub under the cancer-type code nbl. EvidenceHelix groups it with brain and nervous system studies.
Study description
Whole genome or whole exome sequencing on 1089 NBL samples. Comprehensive profiling of 1089 NBL samples. TARGET data is intended exclusively for biomedical research using pediatric data (i.e., the research objectives cannot be accomplished using data from adults) that focus on the development of more effective treatments, diagnostic tests, or prognostic markers for childhood cancers. Moreover, TARGET data can be used for research relevant to the biology, causes, treatment and late complications of treatment of pediatric cancers, but is not intended for the sole purposes of methods and/or tool development (please see Using TARGET Data (https://ocg.cancer.gov/programs/target/using-target-data) section of the OCG website). If you are interested in using TARGET data for publication or other research purposes, you must follow the TARGET Publication Guidelines (https://ocg.cancer.gov/programs/target/target-publication-guidelines).
Text as published in the source's study metadata.
Citation & PubMed
The source lists no citation or PubMed id for this study.
Source & licence
Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.
Source metadata
- Study identifier
- nbl_target_2018_pub
- Short name
- NBL (TARGET, 2018)
- Source cancer-type code
- nbl
- Reference genome
- not given
- Source access groups
- NCI-TARGET;PUBLIC
- Original study
- View on cBioPortal
- Metadata file
- meta_study.txt at e1b75cd25b
- Database licence
- ODC Open Database License (ODbL) 1.0
Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data.
Citations
The source lists no citation or PubMed id for this study.
Related studies
-
Neuroblastoma (AMC Amsterdam, Nature 2012)
Whole genome sequencing of 87 primary neuroblastoma tumors and their matched normals.
Brain and nervous systemOther published and consortium studiesSource code nblPubMed 1 -
Neuroblastoma (Broad, Nat Genet 2013)
Whole Genome and Whole Exome sequencing of 240 high-risk neuroblastoma tumor/normal pairs.
Brain and nervous systemOther published and consortium studiesSource code nblPubMed 1 -
Neuroblastoma (Broad, Nature 2015)
Whole-genome sequencing of 56 neuroblastoma tumor/normal pairs.
Brain and nervous systemOther published and consortium studiesSource code nblPubMed 1 -
Anaplastic Oligodendroglioma and Anaplastic Oligoastrocytoma (MSK, Neuro Oncol 2017)
IMPACT sequencing of 22 Anaplastic Oligodendroglioma and Anaplastic Oligoastrocytomas.
Brain and nervous systemMSK studiesSource code difgPubMed 1 -
Brain Lower Grade Glioma (TCGA, Firehose Legacy)
TCGA Brain Lower Grade Glioma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/LGG/20160128/). Previously known as TCGA Provisional.
Brain and nervous systemTCGA Firehose LegacySource code difg -
Brain Lower Grade Glioma (TCGA, PanCancer Atlas)
Brain Lower Grade Glioma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas…
Brain and nervous systemTCGA PanCancer AtlasSource code difgPubMed 12 -
Brain Tumor PDXs (Mayo Clinic, Clin Cancer Res 2020)
WES on a total of 106 PDXs and 80 PDXs have the matched germline (blood) samples sequenced. A total of 66 PDXs have RNASeq available
Brain and nervous systemOther published and consortium studiesSource code difgPubMed 1 -
Cutaneous Neurofibroma Data Resource (CTF, Scientific Data 2021)
The data are contributed by researchers funded by the Children's Tumor Foundation. The reprocessing of the raw data is managed by the NF Open Science Initiative NF Open Science Initiative .
Brain and nervous systemOther published and consortium studiesSource code nfibPubMed 2