Upper Tract Urothelial Carcinoma (IGBMC, Genome Biology 2021)

Summary

Upper Tract Urothelial Carcinoma (IGBMC, Genome Biology 2021) is a study catalogued by cBioPortal DataHub under the cancer-type code utuc. EvidenceHelix groups it with kidney and bladder studies.

Study description

Whole-exome sequencing of 30 upper-tract urothelial carcinoma patients and their matched normals.

Text as published in the source's study metadata.

Citation & PubMed

Xiaoping et al. Genome Biology 2021

Linked PubMed records: PMID 33397444

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

utuc_igbmc_2021

Short name

(UTUC, 2021)

Source cancer-type code

utuc

Reference genome

not given

Source access groups

PUBLIC

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data.

Citations

Xiaoping et al. Genome Biology 2021

• PubMed record 33397444 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Upper Tract Urothelial Carcinoma (Cornell/Baylor/MDACC, Nat Commun 2019)

  Whole exome sequencing (37 samples) and RNA-seq analysis (32 samples) of 47 upper tract urothelial carcinoma patients.

  Kidney and bladderOther published and consortium studiesSource code utucPubMed 1

• Upper Tract Urothelial Cancer (MSK, Eur Urol 2015)

  Next-generation sequencing (MSK-IMPACT) on all protein-coding exons of 300 cancer associated genes of 85 Upper Tract Urothelial Carcinoma tumor samples and paired normals.

  Kidney and bladderMSK studiesSource code utucPubMed 1

• Upper Tract Urothelial Carcinoma (MSK, Nat Commun 2020)

  Targeted Sequencing of 119 upper tract urothelial carcinoma tumor/normal pairs.

  Kidney and bladderMSK studiesSource code utucPubMed 1

• Upper Tract Urothelial Carcinoma PDX (MSK, Nat Commun 2020)

  MSK-IMPACT sequencing of 34 upper tract urothelial patients and the matching PDX or PDC generated from 17 patient tumors.

  Kidney and bladderMSK studiesSource code utucPubMed 1

• Bladder Urothelial Carcinoma (BGI, Nat Genet 2013)

  Whole-exome and whole-genome sequencing of 99 bladder cancer tumor/normal pairs. Generated by BGI.

  Kidney and bladderOther published and consortium studiesSource code blcaPubMed 1

• Clear Cell Renal Cell Carcinoma (DFCI, Science 2019)

  Whole-exome sequencing of metastatic clear cell renal carcinoma (ccRCC) from 35 tumor/normal pairs.

  Kidney and bladderOther published and consortium studiesSource code ccrccPubMed 1

• Kidney Renal Clear Cell Carcinoma (BGI, Nat Genet 2012)

  Whole-exome sequencing of 10 ccRCC tumor/normal pairs and targeted sequencing of 88 clear cell carcinoma tumor/normal pairs. Generated by BGI-Shenzhen.

  Kidney and bladderOther published and consortium studiesSource code ccrccPubMed 1

• Kidney Renal Clear Cell Carcinoma (IRC, Nat Genet 2014)

  Multi region exome sequencing of 10 clear cell renal cell carcinomas (ccRCCs)

  Kidney and bladderOther published and consortium studiesSource code ccrccPubMed 1

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