Breast Invasive Carcinoma (TCGA, Nature 2012)

Summary

Breast Invasive Carcinoma (TCGA, Nature 2012) is a study catalogued by cBioPortal DataHub under the cancer-type code brca. EvidenceHelix groups it with breast studies and lists it in the TCGA (other releases) collection.

Study description

Whole-exome sequencing (510 samples with matched normals), genomic DNA copy number arrays, DNA methylation, messenger RNA arrays, microRNA sequencing and reverse-phase protein arrays analysis on 825 primary breast cancer samples. The Cancer Genome Atlas (TCGA) (http://cancergenome.nih.gov/) Breast Invasive Carcinoma project. 825 cases. Nature 2012. Raw data via the TCGA Data Portal (https://tcga-data.nci.nih.gov/docs/publications/brca_2012/).

Text as published in the source's study metadata.

Citation & PubMed

TCGA, Nature 2012

Linked PubMed records: PMID 23000897

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

brca_tcga_pub

Short name

Breast (TCGA pub)

Source cancer-type code

brca

Reference genome

not given

Source access groups

PUBLIC

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

TCGA, Nature 2012

• PubMed record 23000897 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Breast Invasive Carcinoma (TCGA, Cell 2015)

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• Breast Cancer (METABRIC, Nature 2012 & Nat Commun 2016)

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• Breast Cancer (MSK, Clinical Cancer Res 2020)

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  BreastMSK studiesSource code brcaPubMed 1

• Breast Cancer (MSK, NPJ Breast Cancer 2019)

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• Breast Cancer (SMC 2018)

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• Breast Cancer Xenografts (British Columbia, Nature 2015)

  Whole genome/targeted sequencing to evaluate the clonal dynamics in 116 breast cancer patient xenografts.

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• Breast Invasive Carcinoma (British Columbia, Nature 2012)

  Whole genome/exome sequencing analysis of 65 breast cancer samples

  BreastOther published and consortium studiesSource code brcaPubMed 1

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