Kidney Chromophobe (TCGA, PanCancer Atlas)

Summary

Kidney Chromophobe (TCGA, PanCancer Atlas) is a study catalogued by cBioPortal DataHub under the cancer-type code chrcc. EvidenceHelix groups it with kidney and bladder studies and lists it in the TCGA PanCancer Atlas collection.

Study description

Kidney Chromophobe TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/pancani3/index.html).

Text as published in the source's study metadata.

Citation & PubMed

TCGA, Cell 2018

Linked PubMed records: PMID 29625048, PMID 29596782, PMID 29622463, PMID 29617662, PMID 29625055, PMID 29625050, PMID 29617662, PMID 32214244, PMID 29625049, PMID 29850653, PMID 36334560

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

kich_tcga_pan_can_atlas_2018

Short name

chromophobe RCC (TCGA PanCan)

Source cancer-type code

chrcc

Reference genome

not given

Source access groups

PUBLIC;PANCAN

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

TCGA, Cell 2018

• PubMed record 29625048 ↗
• PubMed record 29596782 ↗
• PubMed record 29622463 ↗
• PubMed record 29617662 ↗
• PubMed record 29625055 ↗
• PubMed record 29625050 ↗
• PubMed record 29617662 ↗
• PubMed record 32214244 ↗
• PubMed record 29625049 ↗
• PubMed record 29850653 ↗
• PubMed record 36334560 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Kidney Chromophobe (TCGA, Cancer Cell 2014)

  Whole-exome sequencing of 66 chromophobe renal cell carcinoma (ChRCCs) tumor/normal pairs.

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• Kidney Chromophobe (TCGA, Firehose Legacy)

  TCGA Kidney Chromophobe. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/KICH/20160128/). Previously known as TCGA Provisional.

  Kidney and bladderTCGA Firehose LegacySource code chrcc

• Bladder Urothelial Carcinoma (TCGA, PanCancer Atlas)

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  Kidney and bladderTCGA PanCancer AtlasSource code blcaPubMed 11

• Kidney Renal Clear Cell Carcinoma (TCGA, PanCancer Atlas)

  Kidney Renal Clear Cell Carcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/panca…

  Kidney and bladderTCGA PanCancer AtlasSource code ccrccPubMed 12

• Kidney Renal Papillary Cell Carcinoma (TCGA, PanCancer Atlas)

  Kidney Renal Papillary Cell Carcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/p…

  Kidney and bladderTCGA PanCancer AtlasSource code prccPubMed 12

• Bladder Cancer (Columbia University/MSK, Cell 2018)

  Targeted sequencing of 130 bladder cancer tumors, organoids and xenografts and their matched normals via MSK-IMPACT.

  Kidney and bladderMSK studiesSource code bladderPubMed 1

• Bladder Cancer (MSK, Cell Reports 2022)

  Targeted sequencing of 1659 Bladder Cancer tumor/normal samples via MSK-IMPACT.

  Kidney and bladderMSK studiesSource code bladderPubMed 1

• Bladder Cancer (MSK, Clin Cancer Res 2023)

  Targeted sequencing of 526 bladder tumors and their matched normals via MSK-IMPACT.

  Kidney and bladderMSK studiesSource code bladderPubMed 1

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