Kidney Chromophobe (TCGA, Cancer Cell 2014)

Summary

Kidney Chromophobe (TCGA, Cancer Cell 2014) is a study catalogued by cBioPortal DataHub under the cancer-type code chrcc. EvidenceHelix groups it with kidney and bladder studies and lists it in the TCGA (other releases) collection.

Study description

Whole-exome sequencing of 66 chromophobe renal cell carcinoma (ChRCCs) tumor/normal pairs.

Text as published in the source's study metadata.

Citation & PubMed

TCGA, Cancer Cell 2014

Linked PubMed records: PMID 25155756

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

kich_tcga_pub

Short name

chRCC (TCGA 2014)

Source cancer-type code

chrcc

Reference genome

not given

Source access groups

PUBLIC

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

TCGA, Cancer Cell 2014

• PubMed record 25155756 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Kidney Chromophobe (TCGA, Firehose Legacy)

  TCGA Kidney Chromophobe. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/KICH/20160128/). Previously known as TCGA Provisional.

  Kidney and bladderTCGA Firehose LegacySource code chrcc

• Kidney Chromophobe (TCGA, PanCancer Atlas)

  Kidney Chromophobe TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/panca…

  Kidney and bladderTCGA PanCancer AtlasSource code chrccPubMed 11

• Bladder Cancer (MSK/TCGA, 2020)

  Whole-exome or targeted sequencing of 476 muscle-invasive bladder tumor/normal pairs via TCGA or MSK-IMPACT sequencing.

  Kidney and bladderTCGA (other releases)Source code blcaPubMed 1

• Bladder Cancer (TCGA, Cell 2017)

  Whole-exome sequencing of 412 muscle-invasive bladder tumors and matched normal samples.

  Kidney and bladderTCGA (other releases)Source code blcaPubMed 1

• Bladder Urothelial Carcinoma (TCGA, Nature 2014)

  Whole-exome sequencing of 131 high-grade muscle-invasive urothelial bladder carcinomas

  Kidney and bladderTCGA (other releases)Source code blcaPubMed 1

• Kidney Renal Clear Cell Carcinoma (TCGA, Nature 2013)

  Whole-exome sequencing in 417 of 446 clear cell renal cell carcinoma tumor/normal pairs.

  Kidney and bladderTCGA (other releases)Source code ccrccPubMed 1

• Bladder Cancer (Columbia University/MSK, Cell 2018)

  Targeted sequencing of 130 bladder cancer tumors, organoids and xenografts and their matched normals via MSK-IMPACT.

  Kidney and bladderMSK studiesSource code bladderPubMed 1

• Bladder Cancer (MSK, Cell Reports 2022)

  Targeted sequencing of 1659 Bladder Cancer tumor/normal samples via MSK-IMPACT.

  Kidney and bladderMSK studiesSource code bladderPubMed 1

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