Lung Squamous Cell Carcinoma (CPTAC, Cell 2021)

Summary

Lung Squamous Cell Carcinoma (CPTAC, Cell 2021) is a study catalogued by cBioPortal DataHub under the cancer-type code lusc. EvidenceHelix groups it with lung and pleura studies.

Study description

Whole genome / whole exome sequencing and proteogenomic portrait of 108 prospectively collected, treatment-naive, primary LSCC tumors and 99 paired normal adjacent tissues. Generated by CPTAC.

Text as published in the source's study metadata.

Citation & PubMed

Shankha Satpathy et al. 2021 Cell.

Linked PubMed records: PMID 34358469

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

lusc_cptac_2021

Short name

Proteogenome of Lung Squamous Cell Carcinoma (CPTAC Cell 2021)

Source cancer-type code

lusc

Reference genome

not given

Source access groups

PUBLIC

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data.

Citations

Shankha Satpathy et al. 2021 Cell.

• PubMed record 34358469 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Lung Squamous Cell Carcinoma (TCGA, Firehose Legacy)

  TCGA Lung Squamous Cell Carcinoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/LUSC/20160128/). Previously known as TCGA Provisional.

  Lung and pleuraTCGA Firehose LegacySource code lusc

• Lung Squamous Cell Carcinoma (TCGA, Nature 2012)

  Whole exome sequencing of 178 lung squamous cell carcinoma tumor/normal pairs. The Cancer Genome Atlas (TCGA) (http://cancergenome.nih.gov/) Lung Squamous Cell Carcinoma project.

  Lung and pleuraTCGA (other releases)Source code luscPubMed 1

• Lung Squamous Cell Carcinoma (TCGA, PanCancer Atlas)

  Lung Squamous Cell Carcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancancera…

  Lung and pleuraTCGA PanCancer AtlasSource code luscPubMed 12

• Lung Adenocarcinoma (Broad, Cell 2012)

  Whole-exome and/or whole-genome sequencing of 183 lung adenocarcinomas and matched normal tissue pairs.

  Lung and pleuraOther published and consortium studiesSource code luadPubMed 1

• Lung Adenocarcinoma (CAS, Cell 2020)

  Whole-exome sequencing of 103 lung adenocarcinoma cases and their matched normals in Chinese patients.

  Lung and pleuraOther published and consortium studiesSource code luadPubMed 1

• Lung Adenocarcinoma (CPTAC, Cell 2020)

  Whole genome (WGS) or whole exome sequencing (WES) of 110 tumors and 101 matched normal adjacent tissues in lung adenocarcinoma. Proteogenomic characterization generated by CPTAC.

  Lung and pleuraOther published and consortium studiesSource code luadPubMed 1

• Lung Adenocarcinoma (OncoSG, Nat Genet 2020)

  Whole-exome and transcriptome sequencing of 305 east asian lung adenocarcinomas with matched normals. Courtesy of OncoSG (https://src.gisapps.org/OncoSG/). Lung Cancer Consortium Singapore (LCCS).

  Lung and pleuraOther published and consortium studiesSource code luadPubMed 1

• Lung Adenocarcinoma (TSP, Nature 2008)

  Targeted sequencing of 163 lung adenocarcinoma tumor/normal pairs. Generated by WashU/Broad.

  Lung and pleuraOther published and consortium studiesSource code luadPubMed 1

Your notes

Notes and highlights stay in this browser only; they are not sent to EvidenceHelix.