Lung Squamous Cell Carcinoma (TCGA, PanCancer Atlas)

Summary

Lung Squamous Cell Carcinoma (TCGA, PanCancer Atlas) is a study catalogued by cBioPortal DataHub under the cancer-type code lusc. EvidenceHelix groups it with lung and pleura studies and lists it in the TCGA PanCancer Atlas collection.

Study description

Lung Squamous Cell Carcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/pancani3/index.html).

Text as published in the source's study metadata.

Citation & PubMed

TCGA, Cell 2018

Linked PubMed records: PMID 29625048, PMID 29596782, PMID 29622463, PMID 29617662, PMID 29625055, PMID 29625050, PMID 29617662, PMID 30643250, PMID 32214244, PMID 29625049, PMID 29850653, PMID 36334560

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

lusc_tcga_pan_can_atlas_2018

Short name

Lung squ (TCGA PanCan)

Source cancer-type code

lusc

Reference genome

not given

Source access groups

PUBLIC;PANCAN

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

TCGA, Cell 2018

• PubMed record 29625048 ↗
• PubMed record 29596782 ↗
• PubMed record 29622463 ↗
• PubMed record 29617662 ↗
• PubMed record 29625055 ↗
• PubMed record 29625050 ↗
• PubMed record 29617662 ↗
• PubMed record 30643250 ↗
• PubMed record 32214244 ↗
• PubMed record 29625049 ↗
• PubMed record 29850653 ↗
• PubMed record 36334560 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Lung Squamous Cell Carcinoma (CPTAC, Cell 2021)

  Whole genome / whole exome sequencing and proteogenomic portrait of 108 prospectively collected, treatment-naive, primary LSCC tumors and 99 paired normal adjacent tissues. Generated by CPTAC.

  Lung and pleuraOther published and consortium studiesSource code luscPubMed 1

• Lung Squamous Cell Carcinoma (TCGA, Firehose Legacy)

  TCGA Lung Squamous Cell Carcinoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/LUSC/20160128/). Previously known as TCGA Provisional.

  Lung and pleuraTCGA Firehose LegacySource code lusc

• Lung Squamous Cell Carcinoma (TCGA, Nature 2012)

  Whole exome sequencing of 178 lung squamous cell carcinoma tumor/normal pairs. The Cancer Genome Atlas (TCGA) (http://cancergenome.nih.gov/) Lung Squamous Cell Carcinoma project.

  Lung and pleuraTCGA (other releases)Source code luscPubMed 1

• Lung Adenocarcinoma (TCGA, PanCancer Atlas)

  Lung Adenocarcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/panc…

  Lung and pleuraTCGA PanCancer AtlasSource code luadPubMed 12

• Mesothelioma (TCGA, PanCancer Atlas)

  Mesothelioma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/pancani3/in…

  Lung and pleuraTCGA PanCancer AtlasSource code plmesoPubMed 11

• Atypical Small Cell Lung Cancer (MSK, Cancer Discov 2024)

  Targeted sequencing of 31 atypical small cell lung cancers lacking RB1 and TP53 co-inactivation and their matched normals via MSK-IMPACT, including structural variant analysis via whole-genome sequencing. This data is…

  Lung and pleuraMSK studiesSource code lungPubMed 1

• Lung Adenocarcinoma (Broad, Cell 2012)

  Whole-exome and/or whole-genome sequencing of 183 lung adenocarcinomas and matched normal tissue pairs.

  Lung and pleuraOther published and consortium studiesSource code luadPubMed 1

• Lung Adenocarcinoma (CAS, Cell 2020)

  Whole-exome sequencing of 103 lung adenocarcinoma cases and their matched normals in Chinese patients.

  Lung and pleuraOther published and consortium studiesSource code luadPubMed 1

Your notes

Notes and highlights stay in this browser only; they are not sent to EvidenceHelix.