Skin Cutaneous Melanoma (TCGA, Firehose Legacy)

Summary

Skin Cutaneous Melanoma (TCGA, Firehose Legacy) is a study catalogued by cBioPortal DataHub under the cancer-type code skcm. EvidenceHelix groups it with skin and eye studies and lists it in the TCGA Firehose Legacy collection.

Study description

TCGA Skin Cutaneous Melanoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/SKCM/20160128/). Previously known as TCGA Provisional.

Text as published in the source's study metadata.

Citation & PubMed

The source lists no citation or PubMed id for this study.

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

skcm_tcga

Short name

Melanoma (TCGA)

Source cancer-type code

skcm

Reference genome

not given

Source access groups

PUBLIC

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

The source lists no citation or PubMed id for this study.

Related studies

• Melanoma (Broad/Dana Farber, Nature 2012)

  Whole Genome Sequencing of 25 metastatic melanoma samples with matched normals

  Skin and eyeOther published and consortium studiesSource code skcmPubMed 1

• Melanoma (MSK, NEJM 2014)

  Whole-exome sequencing of 64 pretreated (ipilimumab or tremelimumab) melanoma tumor-normal pairs.

  Skin and eyeMSK studiesSource code skcmPubMed 1

• Melanomas (TCGA, Cell 2015)

  Whole-exome sequencing of 333 primary and/or metastatic melanomas.

  Skin and eyeTCGA (other releases)Source code skcmPubMed 1

• Metastatic Melanoma (DFCI, Science 2015)

  Whole-exome sequencing of 110 metastatic melanoma tumor-normal pairs.

  Skin and eyeOther published and consortium studiesSource code skcmPubMed 1

• Metastatic Melanoma (MSK, JCO Precis Oncol 2017)

  Targeted sequencing of pre-treatment 66 Melanoma tumor samples. PubMed (https://ascopubs.org/doi/full/10.1200/PO.16.00054)

  Skin and eyeMSK studiesSource code skcmPubMed 1

• Skin Cutaneous Melanoma (Broad, Cell 2012)

  Whole-exome sequencing of 121 melanoma samples with matched normals.

  Skin and eyeOther published and consortium studiesSource code skcmPubMed 1

• Skin Cutaneous Melanoma (TCGA, PanCancer Atlas)

  Skin Cutaneous Melanoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/…

  Skin and eyeTCGA PanCancer AtlasSource code skcmPubMed 12

• Skin Cutaneous Melanoma (Yale, Nat Genet 2012)

  Exome sequencing of 147 melanoma samples with 99 matched normals.

  Skin and eyeOther published and consortium studiesSource code skcmPubMed 1

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