Skin Cutaneous Melanoma (TCGA, PanCancer Atlas)

Summary

Skin Cutaneous Melanoma (TCGA, PanCancer Atlas) is a study catalogued by cBioPortal DataHub under the cancer-type code skcm. EvidenceHelix groups it with skin and eye studies and lists it in the TCGA PanCancer Atlas collection.

Study description

Skin Cutaneous Melanoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/pancani3/index.html).

Text as published in the source's study metadata.

Citation & PubMed

TCGA, Cell 2018

Linked PubMed records: PMID 29625048, PMID 29596782, PMID 29622463, PMID 29617662, PMID 29625055, PMID 29625050, PMID 29617662, PMID 30643250, PMID 32214244, PMID 29625049, PMID 29850653, PMID 36334560

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

skcm_tcga_pan_can_atlas_2018

Short name

Melanoma (TCGA PanCan 2018)

Source cancer-type code

skcm

Reference genome

not given

Source access groups

PUBLIC;PANCAN

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

TCGA, Cell 2018

• PubMed record 29625048 ↗
• PubMed record 29596782 ↗
• PubMed record 29622463 ↗
• PubMed record 29617662 ↗
• PubMed record 29625055 ↗
• PubMed record 29625050 ↗
• PubMed record 29617662 ↗
• PubMed record 30643250 ↗
• PubMed record 32214244 ↗
• PubMed record 29625049 ↗
• PubMed record 29850653 ↗
• PubMed record 36334560 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Melanoma (Broad/Dana Farber, Nature 2012)

  Whole Genome Sequencing of 25 metastatic melanoma samples with matched normals

  Skin and eyeOther published and consortium studiesSource code skcmPubMed 1

• Melanoma (MSK, NEJM 2014)

  Whole-exome sequencing of 64 pretreated (ipilimumab or tremelimumab) melanoma tumor-normal pairs.

  Skin and eyeMSK studiesSource code skcmPubMed 1

• Melanomas (TCGA, Cell 2015)

  Whole-exome sequencing of 333 primary and/or metastatic melanomas.

  Skin and eyeTCGA (other releases)Source code skcmPubMed 1

• Metastatic Melanoma (DFCI, Science 2015)

  Whole-exome sequencing of 110 metastatic melanoma tumor-normal pairs.

  Skin and eyeOther published and consortium studiesSource code skcmPubMed 1

• Metastatic Melanoma (MSK, JCO Precis Oncol 2017)

  Targeted sequencing of pre-treatment 66 Melanoma tumor samples. PubMed (https://ascopubs.org/doi/full/10.1200/PO.16.00054)

  Skin and eyeMSK studiesSource code skcmPubMed 1

• Skin Cutaneous Melanoma (Broad, Cell 2012)

  Whole-exome sequencing of 121 melanoma samples with matched normals.

  Skin and eyeOther published and consortium studiesSource code skcmPubMed 1

• Skin Cutaneous Melanoma (TCGA, Firehose Legacy)

  TCGA Skin Cutaneous Melanoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/SKCM/20160128/). Previously known as TCGA Provisional.

  Skin and eyeTCGA Firehose LegacySource code skcm

• Skin Cutaneous Melanoma (Yale, Nat Genet 2012)

  Exome sequencing of 147 melanoma samples with 99 matched normals.

  Skin and eyeOther published and consortium studiesSource code skcmPubMed 1

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