Esophageal Carcinoma (TCGA, Firehose Legacy)

Summary

Esophageal Carcinoma (TCGA, Firehose Legacy) is a study catalogued by cBioPortal DataHub under the cancer-type code esca. EvidenceHelix groups it with esophagus and stomach studies and lists it in the TCGA Firehose Legacy collection.

Study description

TCGA Esophageal Carcinoma . Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/ESCA/20160128/). Previously known as TCGA Provisional.

Text as published in the source's study metadata.

Citation & PubMed

The source lists no citation or PubMed id for this study.

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

esca_tcga

Short name

Esophagus (TCGA)

Source cancer-type code

esca

Reference genome

not given

Source access groups

PUBLIC

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

The source lists no citation or PubMed id for this study.

Related studies

• Esophageal Adenocarcinoma (DFCI, Nat Genet 2013)

  Whole-exome sequencing of 149 tumor/normal pairs and whole-genome sequencing of 16 pairs from 149 esophageal adenocarcinoma patients.

  Esophagus and stomachOther published and consortium studiesSource code escaPubMed 1

• Esophageal Adenocarcinoma (TCGA, PanCancer Atlas)

  Esophageal Adenocarcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratla…

  Esophagus and stomachTCGA PanCancer AtlasSource code escaPubMed 11

• Stomach Adenocarcinoma (TCGA, Firehose Legacy)

  TCGA Stomach Adenocarcinoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/STAD/20160128/). Previously known as TCGA Provisional.

  Esophagus and stomachTCGA Firehose LegacySource code stad

• Esophageal Cancer-TRAP Project (MSK, Lancet Oncol 2020)

  Targeted and WES recapture sequencing of tumor/normal samples from 37 Esophageal Cancer patients.

  Esophagus and stomachMSK studiesSource code egcPubMed 1

• Esophageal Carcinoma (TCGA, Nature 2017)

  Whole exome sequencing of 559 esophageal and gastric carcinoma tumors with matched normals.

  Esophagus and stomachTCGA (other releases)Source code egcPubMed 1

• Esophageal Squamous Cell Carcinoma (ICGC, Nature 2014)

  Whole-genome or whole-exome sequencing of 88 esophageal squamous cell carcinoma tumor/normal pairs.

  Esophagus and stomachOther published and consortium studiesSource code esccPubMed 1

• Esophageal Squamous Cell Carcinoma (UCLA, Nat Genet 2014)

  Whole exome sequencing (WXS) or targeted deep sequencing (TDS) of 139 paired esophageal squamous cell carcinoma patients.

  Esophagus and stomachOther published and consortium studiesSource code esccPubMed 1

• Esophageal/Stomach Cancer (MSK, 2020)

  Targeted sequencing of 487 Esophageal/stomach cancer tumor-normal pairs via MSK-IMPACT.

  Esophagus and stomachMSK studiesSource code stomachPubMed 1

Your notes

Notes and highlights stay in this browser only; they are not sent to EvidenceHelix.