Stomach Adenocarcinoma (TCGA, Firehose Legacy)

Summary

Stomach Adenocarcinoma (TCGA, Firehose Legacy) is a study catalogued by cBioPortal DataHub under the cancer-type code stad. EvidenceHelix groups it with esophagus and stomach studies and lists it in the TCGA Firehose Legacy collection.

Study description

TCGA Stomach Adenocarcinoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/STAD/20160128/). Previously known as TCGA Provisional.

Text as published in the source's study metadata.

Citation & PubMed

The source lists no citation or PubMed id for this study.

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

stad_tcga

Short name

Stomach (TCGA)

Source cancer-type code

stad

Reference genome

not given

Source access groups

PUBLIC

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

The source lists no citation or PubMed id for this study.

Related studies

• Gastric Cancer (OncoSG, 2018)

  Whole-genome sequencing of 147 gastric cancer tumors with matched normals. Courtesy of OncoSG (https://src.gisapps.org/OncoSG/).

  Esophagus and stomachOther published and consortium studiesSource code stadPubMed 1

• Stomach Adenocarcinoma (Pfizer and UHK, Nat Genet 2014)

  Whole genome sequencing of 100 gastric cancer tumor-normal pairs from the University of Hong Kong and Pfizer.

  Esophagus and stomachOther published and consortium studiesSource code stadPubMed 1

• Stomach Adenocarcinoma (TCGA, Nature 2014)

  Whole-exome sequencing of 295 primary gastric adenocarcinomas tumors with matched normals. TCGA Stomach Adenocarcinoma Project; raw data at the NCI (https://tcga-data.nci.nih.gov/docs/publications/stad_2014/).

  Esophagus and stomachTCGA (other releases)Source code stadPubMed 1

• Stomach Adenocarcinoma (TCGA, PanCancer Atlas)

  Stomach Adenocarcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/p…

  Esophagus and stomachTCGA PanCancer AtlasSource code stadPubMed 11

• Stomach Adenocarcinoma (U Tokyo, Nat Genet 2014)

  Whole exome sequencing of 30 diffuse-type gastric adenocarcinoma samples (with matched normals) from the University of Tokyo.

  Esophagus and stomachOther published and consortium studiesSource code stadPubMed 1

• Stomach Adenocarcinoma (UHK, Nat Genet 2011)

  Exome sequencing of 22 gastric cancer samples with matched normals.

  Esophagus and stomachOther published and consortium studiesSource code stadPubMed 1

• Esophageal Carcinoma (TCGA, Firehose Legacy)

  TCGA Esophageal Carcinoma . Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/ESCA/20160128/). Previously known as TCGA Provisional.

  Esophagus and stomachTCGA Firehose LegacySource code esca

• Esophageal Adenocarcinoma (DFCI, Nat Genet 2013)

  Whole-exome sequencing of 149 tumor/normal pairs and whole-genome sequencing of 16 pairs from 149 esophageal adenocarcinoma patients.

  Esophagus and stomachOther published and consortium studiesSource code escaPubMed 1

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