Stomach Adenocarcinoma (TCGA, PanCancer Atlas)

Summary

Stomach Adenocarcinoma (TCGA, PanCancer Atlas) is a study catalogued by cBioPortal DataHub under the cancer-type code stad. EvidenceHelix groups it with esophagus and stomach studies and lists it in the TCGA PanCancer Atlas collection.

Study description

Stomach Adenocarcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/pancani3/index.html).

Text as published in the source's study metadata.

Citation & PubMed

TCGA, Cell 2018

Linked PubMed records: PMID 29625048, PMID 29596782, PMID 29622463, PMID 29617662, PMID 29625055, PMID 29625050, PMID 29617662, PMID 32214244, PMID 29625049, PMID 29850653, PMID 36334560

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

stad_tcga_pan_can_atlas_2018

Short name

Stomach (TCGA PanCan 2018)

Source cancer-type code

stad

Reference genome

not given

Source access groups

PUBLIC;PANCAN

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

TCGA, Cell 2018

• PubMed record 29625048 ↗
• PubMed record 29596782 ↗
• PubMed record 29622463 ↗
• PubMed record 29617662 ↗
• PubMed record 29625055 ↗
• PubMed record 29625050 ↗
• PubMed record 29617662 ↗
• PubMed record 32214244 ↗
• PubMed record 29625049 ↗
• PubMed record 29850653 ↗
• PubMed record 36334560 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Gastric Cancer (OncoSG, 2018)

  Whole-genome sequencing of 147 gastric cancer tumors with matched normals. Courtesy of OncoSG (https://src.gisapps.org/OncoSG/).

  Esophagus and stomachOther published and consortium studiesSource code stadPubMed 1

• Stomach Adenocarcinoma (Pfizer and UHK, Nat Genet 2014)

  Whole genome sequencing of 100 gastric cancer tumor-normal pairs from the University of Hong Kong and Pfizer.

  Esophagus and stomachOther published and consortium studiesSource code stadPubMed 1

• Stomach Adenocarcinoma (TCGA, Firehose Legacy)

  TCGA Stomach Adenocarcinoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/STAD/20160128/). Previously known as TCGA Provisional.

  Esophagus and stomachTCGA Firehose LegacySource code stad

• Stomach Adenocarcinoma (TCGA, Nature 2014)

  Whole-exome sequencing of 295 primary gastric adenocarcinomas tumors with matched normals. TCGA Stomach Adenocarcinoma Project; raw data at the NCI (https://tcga-data.nci.nih.gov/docs/publications/stad_2014/).

  Esophagus and stomachTCGA (other releases)Source code stadPubMed 1

• Stomach Adenocarcinoma (U Tokyo, Nat Genet 2014)

  Whole exome sequencing of 30 diffuse-type gastric adenocarcinoma samples (with matched normals) from the University of Tokyo.

  Esophagus and stomachOther published and consortium studiesSource code stadPubMed 1

• Stomach Adenocarcinoma (UHK, Nat Genet 2011)

  Exome sequencing of 22 gastric cancer samples with matched normals.

  Esophagus and stomachOther published and consortium studiesSource code stadPubMed 1

• Esophageal Adenocarcinoma (TCGA, PanCancer Atlas)

  Esophageal Adenocarcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratla…

  Esophagus and stomachTCGA PanCancer AtlasSource code escaPubMed 11

• Esophageal Adenocarcinoma (DFCI, Nat Genet 2013)

  Whole-exome sequencing of 149 tumor/normal pairs and whole-genome sequencing of 16 pairs from 149 esophageal adenocarcinoma patients.

  Esophagus and stomachOther published and consortium studiesSource code escaPubMed 1

Your notes

Notes and highlights stay in this browser only; they are not sent to EvidenceHelix.