Stomach Adenocarcinoma (TCGA, Nature 2014)

Summary

Stomach Adenocarcinoma (TCGA, Nature 2014) is a study catalogued by cBioPortal DataHub under the cancer-type code stad. EvidenceHelix groups it with esophagus and stomach studies and lists it in the TCGA (other releases) collection.

Study description

Whole-exome sequencing of 295 primary gastric adenocarcinomas tumors with matched normals. TCGA Stomach Adenocarcinoma Project; raw data at the NCI (https://tcga-data.nci.nih.gov/docs/publications/stad_2014/).

Text as published in the source's study metadata.

Citation & PubMed

TCGA, Nature 2014

Linked PubMed records: PMID 25079317

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

stad_tcga_pub

Short name

Stomach (TCGA pub)

Source cancer-type code

stad

Reference genome

not given

Source access groups

PUBLIC

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

TCGA, Nature 2014

• PubMed record 25079317 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Gastric Cancer (OncoSG, 2018)

  Whole-genome sequencing of 147 gastric cancer tumors with matched normals. Courtesy of OncoSG (https://src.gisapps.org/OncoSG/).

  Esophagus and stomachOther published and consortium studiesSource code stadPubMed 1

• Stomach Adenocarcinoma (Pfizer and UHK, Nat Genet 2014)

  Whole genome sequencing of 100 gastric cancer tumor-normal pairs from the University of Hong Kong and Pfizer.

  Esophagus and stomachOther published and consortium studiesSource code stadPubMed 1

• Stomach Adenocarcinoma (TCGA, Firehose Legacy)

  TCGA Stomach Adenocarcinoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/STAD/20160128/). Previously known as TCGA Provisional.

  Esophagus and stomachTCGA Firehose LegacySource code stad

• Stomach Adenocarcinoma (TCGA, PanCancer Atlas)

  Stomach Adenocarcinoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/p…

  Esophagus and stomachTCGA PanCancer AtlasSource code stadPubMed 11

• Stomach Adenocarcinoma (U Tokyo, Nat Genet 2014)

  Whole exome sequencing of 30 diffuse-type gastric adenocarcinoma samples (with matched normals) from the University of Tokyo.

  Esophagus and stomachOther published and consortium studiesSource code stadPubMed 1

• Stomach Adenocarcinoma (UHK, Nat Genet 2011)

  Exome sequencing of 22 gastric cancer samples with matched normals.

  Esophagus and stomachOther published and consortium studiesSource code stadPubMed 1

• Esophageal Carcinoma (TCGA, Nature 2017)

  Whole exome sequencing of 559 esophageal and gastric carcinoma tumors with matched normals.

  Esophagus and stomachTCGA (other releases)Source code egcPubMed 1

• Esophageal Adenocarcinoma (DFCI, Nat Genet 2013)

  Whole-exome sequencing of 149 tumor/normal pairs and whole-genome sequencing of 16 pairs from 149 esophageal adenocarcinoma patients.

  Esophagus and stomachOther published and consortium studiesSource code escaPubMed 1

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