Uveal Melanoma (QIMR, Oncotarget 2016)

Summary

Uveal Melanoma (QIMR, Oncotarget 2016) is a study catalogued by cBioPortal DataHub under the cancer-type code um. EvidenceHelix groups it with skin and eye studies.

Study description

Whole-genome or whole-exome sequencing of tumor/normal pairs from 28 uveal melanoma samples.

Text as published in the source's study metadata.

Citation & PubMed

Johansson et al. Oncotarget 2016

Linked PubMed records: PMID 26683228

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

um_qimr_2016

Short name

UM (QIMR)

Source cancer-type code

um

Reference genome

not given

Source access groups

PUBLIC

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data.

Citations

Johansson et al. Oncotarget 2016

• PubMed record 26683228 ↗

Citation counts are not part of the source metadata and are not shown.

Related studies

• Uveal Melanoma (TCGA, Firehose Legacy)

  TCGA Uveal Melanoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/UVM/20160128/). Previously known as TCGA Provisional.

  Skin and eyeTCGA Firehose LegacySource code um

• Uveal Melanoma (TCGA, PanCancer Atlas)

  Uveal melanoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/pancani3/…

  Skin and eyeTCGA PanCancer AtlasSource code umPubMed 11

• Acral Melanoma (TGEN, Genome Res 2017)

  Whole exome sequencing and transcriptome analysis of 34 Acral Melanoma patients (33 with matched normals).

  Skin and eyeOther published and consortium studiesSource code melPubMed 1

• Basal Cell Carcinoma (UNIGE, Nat Genet 2016)

  Whole-exome sequencing of 126 basal cell carcinoma tumor/normal pairs; targeted sequencing of 163 sporadic samples (40 tumor/normal pairs) and 4 Gorlin symdrome basal cell carcinomas.

  Skin and eyeOther published and consortium studiesSource code bccPubMed 1

• Cutaneous Squamous Cell Carcinoma (DFCI, Clin Cancer Res 2015)

  Targeted sequencing of 29 metastatic cutaneous squamous cell carcinoma samples.

  Skin and eyeOther published and consortium studiesSource code csccPubMed 1

• Cutaneous Squamous Cell Carcinoma (MD Anderson, Clin Cancer Res 2014)

  Whole-exome sequencing of tumor/normal pairs from 39 aggressive cutaneous squamous cell carcinoma cases.

  Skin and eyeOther published and consortium studiesSource code csccPubMed 1

• Cutaneous Squamous Cell Carcinoma (UCSF, NPJ Genom Med 2021)

  Catalogue of driver genes in cutaneous squamous cell carcinoma. Meta-analysis of 105 normal/tumor pairs.

  Skin and eyeOther published and consortium studiesSource code csccPubMed 1

• Cutaneous Squamous Cell Carcinoma (UOW, Front Oncol 2022)

  Whole genome sequencing of 25 metastatic cutaneous squamous cell carcinoma and their matched normals. Generated by the Ranson Lab 2022.

  Skin and eyeOther published and consortium studiesSource code csccPubMed 1

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