Uveal Melanoma (TCGA, Firehose Legacy)

Summary

Uveal Melanoma (TCGA, Firehose Legacy) is a study catalogued by cBioPortal DataHub under the cancer-type code um. EvidenceHelix groups it with skin and eye studies and lists it in the TCGA Firehose Legacy collection.

Study description

TCGA Uveal Melanoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/UVM/20160128/). Previously known as TCGA Provisional.

Text as published in the source's study metadata.

Citation & PubMed

The source lists no citation or PubMed id for this study.

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier

uvm_tcga

Short name

Uveal melanoma (TCGA)

Source cancer-type code

um

Reference genome

not given

Source access groups

PUBLIC

Original study

View on cBioPortal

Metadata file

meta_study.txt at e1b75cd25b

Database licence

ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

The source lists no citation or PubMed id for this study.

Related studies

• Uveal Melanoma (QIMR, Oncotarget 2016)

  Whole-genome or whole-exome sequencing of tumor/normal pairs from 28 uveal melanoma samples.

  Skin and eyeOther published and consortium studiesSource code umPubMed 1

• Uveal Melanoma (TCGA, PanCancer Atlas)

  Uveal melanoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/pancani3/…

  Skin and eyeTCGA PanCancer AtlasSource code umPubMed 11

• Skin Cutaneous Melanoma (TCGA, Firehose Legacy)

  TCGA Skin Cutaneous Melanoma. Source data from GDAC Firehose (http://gdac.broadinstitute.org/runs/stddata__2016_01_28/data/SKCM/20160128/). Previously known as TCGA Provisional.

  Skin and eyeTCGA Firehose LegacySource code skcm

• Acral Melanoma (TGEN, Genome Res 2017)

  Whole exome sequencing and transcriptome analysis of 34 Acral Melanoma patients (33 with matched normals).

  Skin and eyeOther published and consortium studiesSource code melPubMed 1

• Basal Cell Carcinoma (UNIGE, Nat Genet 2016)

  Whole-exome sequencing of 126 basal cell carcinoma tumor/normal pairs; targeted sequencing of 163 sporadic samples (40 tumor/normal pairs) and 4 Gorlin symdrome basal cell carcinomas.

  Skin and eyeOther published and consortium studiesSource code bccPubMed 1

• Cutaneous Squamous Cell Carcinoma (DFCI, Clin Cancer Res 2015)

  Targeted sequencing of 29 metastatic cutaneous squamous cell carcinoma samples.

  Skin and eyeOther published and consortium studiesSource code csccPubMed 1

• Cutaneous Squamous Cell Carcinoma (MD Anderson, Clin Cancer Res 2014)

  Whole-exome sequencing of tumor/normal pairs from 39 aggressive cutaneous squamous cell carcinoma cases.

  Skin and eyeOther published and consortium studiesSource code csccPubMed 1

• Cutaneous Squamous Cell Carcinoma (UCSF, NPJ Genom Med 2021)

  Catalogue of driver genes in cutaneous squamous cell carcinoma. Meta-analysis of 105 normal/tumor pairs.

  Skin and eyeOther published and consortium studiesSource code csccPubMed 1

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