Uveal Melanoma (TCGA, PanCancer Atlas) | Cancer study catalog

Summary

Uveal Melanoma (TCGA, PanCancer Atlas) is a study catalogued by cBioPortal DataHub under the cancer-type code um. EvidenceHelix groups it with skin and eye studies and lists it in the TCGA PanCancer Atlas collection.

Study description

Uveal melanoma TCGA PanCancer data. The original data is here (https://gdc.cancer.gov/about-data/publications/pancanatlas). The publications are here (https://www.cell.com/pb-assets/consortium/pancanceratlas/pancani3/index.html).

Text as published in the source's study metadata.

Citation & PubMed

TCGA, Cell 2018

Linked PubMed records: PMID 29625048, PMID 29596782, PMID 29622463, PMID 29617662, PMID 29625055, PMID 29625050, PMID 29617662, PMID 32214244, PMID 29625049, PMID 29850653, PMID 36334560

Source & licence

Metadata from cBioPortal DataHub at e1b75cd25b, available under the ODC Open Database License (ODbL) 1.0. See the Source metadata tab for every field.

Source metadata

Study identifier: uvm_tcga_pan_can_atlas_2018
Short name: Uveal melanoma (TCGA PanCan 2018)
Source cancer-type code: um
Reference genome: not given
Source access groups: PUBLIC;PANCAN
Original study: View on cBioPortal
Metadata file: meta_study.txt at e1b75cd25b
Database licence: ODC Open Database License (ODbL) 1.0

Study-level metadata only (title, description, cancer-type code, citation, PubMed ids). No patient, sample, mutation or clinical data, and no publication full text, is included. Individual studies may carry their own terms; follow each study's source links before reusing its data. TCGA data are available under the Broad Institute GDAC TCGA Analysis Pipeline License; TCGA-derived records are preliminary or legacy releases.

Citations

TCGA, Cell 2018

Citation counts are not part of the source metadata and are not shown.

Related studies

Uveal Melanoma (QIMR, Oncotarget 2016)
Whole-genome or whole-exome sequencing of tumor/normal pairs from 28 uveal melanoma samples.

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Uveal Melanoma (TCGA, Firehose Legacy)
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Skin and eyeTCGA Firehose LegacySource code um
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Acral Melanoma (TGEN, Genome Res 2017)
Whole exome sequencing and transcriptome analysis of 34 Acral Melanoma patients (33 with matched normals).

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Cutaneous Squamous Cell Carcinoma (MD Anderson, Clin Cancer Res 2014)
Whole-exome sequencing of tumor/normal pairs from 39 aggressive cutaneous squamous cell carcinoma cases.

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Cutaneous Squamous Cell Carcinoma (UCSF, NPJ Genom Med 2021)
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